PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.182020.1
Common NameCsa_1G569510, LOC101208615
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YB
Protein Properties Length: 124aa    MW: 14113.8 Da    PI: 6.5184
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.182020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB134.63.1e-4212100795
           NF-YB   7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     +lPianv rimkk++P+++kisk+ak+ +qec+ efisfvtsea+++cq+e+r+t+ngdd++wa+++lG+++y+e+ +++l ++re+e+
  Cucsa.182020.1  12 ELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER 100
                     69*************************************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-397115IPR009072Histone-fold
SuperFamilySSF471135.43E-3112114IPR009072Histone-fold
PfamPF008089.7E-261275IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.8E-124058No hitNo description
PRINTSPR006157.8E-125977No hitNo description
PRINTSPR006157.8E-127896No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MENHHNGDEF LELPIANVER IMKKIIPQKG KISKEAKKKM QECANEFISF VTSEAAQRCQ  60
NENRRTLNGD DIYWAFGSLG LDNYAEASSK FLLNFREVER IKVDEKHKSK DNHGEIGETS  120
SPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B1e-321397892Transcription factor HapC (Eurofung)
4g91_B1e-321397892Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818061e-119LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132561e-119LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135780.15e-88PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO040272e-40NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A0A0LW126e-88A0A0A0LW12_CUCSA; Uncharacterized protein
STRINGPOPTR_0013s02030.15e-40(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.19e-42nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]